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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
total RNA-seq
187
DNase-seq
114
ATAC-seq
82
ChIP-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
301
DNA accessibility
217
Transcription
82
DNA binding
Target of assay
78
histone
78
histone modification
53
narrow histone mark
control
25
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
542
bam
542
bigWig
283
bed narrowPeak
224
bigBed narrowPeak
215
tsv
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
73
fastq
27
tagAlign
1
csv
Organism
601
Homo sapiens
Biosample type
333
tissue
267
primary cell
1
cell line
Organ
173
liver
80
kidney
79
epithelium
76
pancreas
41
musculature of body
33
heart
32
limb
30
brain
18
ureter
15
connective tissue
7
vasculature
6
eye
5
blood vessel
2
artery
1
adipose tissue
Project
556
AMP
45
T1D
Genome assembly (visualization)
519
hg19
489
GRCh38
Lab
556
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
30
inconsistent ontology term
Audit category:
32
missing controlled_by
target.investigated_as!
control
BIOSAMPLE
ASSAY
601 results
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Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
pCHi-C
single cell RNA-seq
tissue
liver
143
27
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic ductal cell
4
4
13
pancreatic beta cell
10
4
pancreatic acinar cell
2
3
8
+ See 52 more…
cell line
HepG2
1
See all biosamples
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