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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
52
total RNA-seq
41
WGBS
35
single cell RNA-seq
22
snATAC-seq
Assay category
113
DNA accessibility
87
Transcription
41
DNA methylation
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
65
fastq
64
bam
60
bigWig
52
bed narrowPeak
26
tsv
14
bigBed narrowPeak
7
txt
1
bed bed3+
1
csv
Organism
241
Homo sapiens
Biosample type
175
primary cell
66
tissue
Organ
144
pancreas
120
epithelium
40
liver
2
musculature of body
Project
134
HPAP
107
AMP
Genome assembly (visualization)
79
hg19
40
GRCh38
Lab
134
Klaus Kaestner, Upenn
43
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
241 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
primary cell
pancreatic alpha cell
25
10
25
Langerhans cell
33
21
pancreatic beta cell
17
10
16
pancreatic acinar cell
7
2
pancreatic ductal cell
4
4
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tissue
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
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