Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
total RNA-seq
41
WGBS
35
single cell RNA-seq
32
ChIP-seq
22
snATAC-seq
Assay category
113
DNA accessibility
41
DNA methylation
35
Transcription
32
DNA binding
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
April, 2018
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
84
bed narrowPeak
66
bigWig
65
fastq
64
bam
14
bigBed narrowPeak
1
bed bed3+
1
csv
1
txt
Organism
221
Homo sapiens
Biosample type
181
primary cell
40
tissue
Organ
144
pancreas
115
epithelium
20
liver
2
musculature of body
Project
134
HPAP
87
AMP
Genome assembly (visualization)
85
hg19
46
GRCh38
Lab
134
Klaus Kaestner, Upenn
49
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
32
missing controlled_by
month_released!
November, 2020
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
221 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
ChIP-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
25
pancreatic beta cell
17
16
pancreatic ductal cell
4
13
pancreatic acinar cell
7
8
+ See 2 more…
tissue
liver
20
islet of Langerhans
18
skeletal muscle tissue
1
1
See all biosamples
Download