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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
91
ATAC-seq
52
total RNA-seq
41
WGBS
35
single cell RNA-seq
22
snATAC-seq
Assay category
113
DNA accessibility
112
DNA binding
87
Transcription
41
DNA methylation
Target of assay
92
histone
92
histone modification
54
broad histone mark
38
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
175
bam
157
bigWig
149
bed narrowPeak
134
zippedFastqFolder
97
fastq
78
bigBed narrowPeak
26
tsv
7
txt
1
bed bed3+
1
csv
Organism
353
Homo sapiens
Biosample type
207
primary cell
146
tissue
Organ
176
pancreas
141
epithelium
57
heart
40
liver
23
kidney
2
musculature of body
Project
219
AMP
134
HPAP
Genome assembly (visualization)
176
hg19
136
GRCh38
Lab
155
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
353 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
primary cell
pancreatic alpha cell
25
10
25
Langerhans cell
33
21
pancreatic beta cell
17
10
16
pancreatic ductal cell
13
4
4
pancreatic acinar cell
8
7
2
+ See 2 more…
tissue
liver
20
20
heart left ventricle
35
islet of Langerhans
18
6
kidney
23
heart right ventricle
13
+ See 2 more…
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