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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
single cell RNA-seq
22
snATAC-seq
18
ATAC-seq
11
ChIP-seq
6
total RNA-seq
Assay category
41
Transcription
40
DNA accessibility
11
DNA binding
Target of assay
11
histone
11
histone modification
7
broad histone mark
4
narrow histone mark
Date released
680
February, 2021
373
May, 2021
328
August, 2017
282
August, 2021
273
October, 2019
197
June, 2019
153
February, 2023
147
May, 2020
135
July, 2018
115
May, 2019
87
July, 2019
85
November, 2017
80
April, 2019
80
May, 2022
74
October, 2018
55
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
November, 2018
34
December, 2018
27
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
54
zippedFastqFolder
36
fastq
35
bam
29
bed narrowPeak
11
bigWig
7
txt
1
bed bed3+
1
csv
Organism
92
Homo sapiens
Biosample type
66
primary cell
26
tissue
Organ
176
pancreas
epithelium
liver
2
musculature of body
Project
54
HPAP
38
AMP
Genome assembly (visualization)
30
hg19
11
GRCh38
Lab
54
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
14
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
11
missing controlled_by
organ_slims!
epithelium
liver
BIOSAMPLE
ASSAY
92 results
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single cell RNA-seq
snATAC-seq
ATAC-seq
ChIP-seq
total RNA-seq
primary cell
Langerhans cell
33
21
pancreatic endocrine cell
11
pancreatic cell
1
tissue
islet of Langerhans
18
6
skeletal muscle tissue
1
1
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