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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
14
ATAC-seq
1
single cell RNA-seq
Assay category
438
DNA binding
14
DNA accessibility
1
Transcription
Target of assay
244
transcription factor
120
histone
120
histone modification
71
control
67
broad histone mark
66
recombinant protein
53
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
464
bam
406
bigWig
397
fastq
359
bed narrowPeak
326
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
tsv
3
tar
1
csv
Organism
453
Homo sapiens
Biosample type
315
cell line
82
tissue
56
primary cell
Organ
315
liver
91
brain
46
pancreas
41
epithelium
6
vasculature
3
blood vessel
Project
453
AMP
Genome assembly (visualization)
327
hg19
326
GRCh38
Lab
453
AMP-T2D consortium
Audit category:
42
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
files.file_type!
tsv
BIOSAMPLE
ASSAY
453 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 1 more…
primary cell
pancreatic ductal cell
13
4
pancreatic acinar cell
8
3
pancreatic endocrine cell
11
pancreatic beta cell
4
astrocyte of the cerebellum
3
+ See 4 more…
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