Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
total RNA-seq
15
ATAC-seq
10
MeRIP-seq
1
DNase-seq
1
single cell RNA-seq
Assay category
32
DNA binding
16
DNA accessibility
1
Transcription
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
5
control
5
nucleotide modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
174
May, 2022
170
February, 2021
151
May, 2020
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
48
bam
48
bed narrowPeak
47
bigWig
47
fastq
15
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
csv
Organism
59
Homo sapiens
Biosample type
49
primary cell
6
cell line
4
tissue
Organ
56
pancreas
41
epithelium
2
connective tissue
Project
59
AMP
Genome assembly (visualization)
48
GRCh38
48
hg19
Lab
49
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
32
missing controlled_by
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
59 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
MeRIP-seq
DNase-seq
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
pancreatic acinar cell
8
3
pancreatic endocrine cell
11
pancreatic beta cell
4
pancreatic alpha cell
3
+ See 2 more…
cell line
EndoC_BH1
6
tissue
islet of Langerhans
4
See all biosamples
Download