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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
26
total RNA-seq
19
ATAC-seq
9
DNase-seq
7
WGBS
2
single cell RNA-seq
1
FAIRE-seq
Assay category
108
DNA binding
29
DNA accessibility
28
Transcription
7
DNA methylation
Target of assay
64
transcription factor
32
histone
32
histone modification
21
RNA binding protein
17
broad histone mark
16
recombinant protein
15
narrow histone mark
12
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
172
fastq
170
bam
157
bigWig
124
bed narrowPeak
92
bigBed narrowPeak
26
tsv
11
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
csv
Organism
172
Homo sapiens
Biosample type
79
primary cell
61
cell line
32
tissue
Organ
90
pancreas
66
epithelium
53
liver
15
blood
15
bodily fluid
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
172
AMP
Genome assembly (visualization)
158
GRCh38
150
hg19
Lab
172
AMP-T2D consortium
Audit category:
35
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
172 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
6
pancreatic alpha cell
10
5
pancreatic acinar cell
8
2
4
pancreatic endocrine cell
11
+ See 1 more…
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
1
2
islet of Langerhans
6
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
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