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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
47
total RNA-seq
41
single cell RNA-seq
17
ATAC-seq
Assay category
88
Transcription
57
DNA binding
17
DNA accessibility
Target of assay
39
histone
39
histone modification
21
broad histone mark
18
narrow histone mark
14
transcription factor
6
RNA binding protein
6
chromatin remodeller
4
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
144
fastq
102
bam
101
bigWig
67
bed narrowPeak
35
bigBed narrowPeak
31
tsv
19
zippedFastqFolder
1
csv
Organism
162
Homo sapiens
Biosample type
132
primary cell
23
cell line
7
tissue
Organ
91
pancreas
80
epithelium
18
blood
18
bodily fluid
7
spleen
5
liver
Project
103
AMP
59
HPAP
Genome assembly (visualization)
101
GRCh38
98
hg19
Lab
103
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
32
missing controlled_by
BIOSAMPLE
ASSAY
162 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
25
5
pancreatic ductal cell
13
4
4
pancreatic beta cell
11
5
pancreatic acinar cell
8
2
3
+ See 2 more…
cell line
GM12878
18
HepG2
5
tissue
spleen
7
See all biosamples
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