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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
21
ChIP-seq
14
ATAC-seq
6
RRBS
2
Hi-C
Assay category
31
Transcription
21
DNA binding
14
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
21
histone
21
histone modification
11
narrow histone mark
10
broad histone mark
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
68
bigWig
66
bam
61
fastq
35
bed narrowPeak
31
tsv
14
bigBed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
2
bed bed3+
2
hdf5
Organism
74
Homo sapiens
Biosample type
74
primary cell
Organ
78
pancreas
74
epithelium
25
heart
18
brain
18
connective tissue
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
74
AMP
Genome assembly (visualization)
74
hg19
66
GRCh38
Lab
74
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
21
missing controlled_by
BIOSAMPLE
ASSAY
74 results
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total RNA-seq
ChIP-seq
ATAC-seq
RRBS
Hi-C
primary cell
pancreatic ductal cell
4
13
4
pancreatic beta cell
10
4
pancreatic acinar cell
2
8
3
pancreatic alpha cell
10
3
epithelial cell of proximal tubule
1
1
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