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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
29
total RNA-seq
15
ATAC-seq
5
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
45
DNA binding
29
Transcription
21
DNA accessibility
1
3D chromatin structure
Target of assay
42
histone
42
histone modification
22
broad histone mark
20
narrow histone mark
3
control
Date released
80
May, 2022
61
September, 2018
52
February, 2023
35
October, 2019
33
April, 2018
33
July, 2018
32
February, 2021
29
August, 2017
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
93
bam
86
bigWig
61
fastq
56
bed narrowPeak
29
tsv
28
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
96
Homo sapiens
Biosample type
94
primary cell
2
cell line
Organ
96
epithelium
90
pancreas
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
30
kidney
26
artery
21
eye
21
vein
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
96
AMP
Genome assembly (visualization)
88
hg19
84
GRCh38
Lab
96
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
21
missing controlled_by
BIOSAMPLE
ASSAY
96 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
+ See 4 more…
cell line
glomerular visceral epithelial cell
1
1
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