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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
total RNA-seq
20
ATAC-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
4
single cell RNA-seq
2
FAIRE-seq
Assay category
92
Transcription
27
DNA methylation
22
DNA accessibility
8
3D chromatin structure
Target of assay
32
histone
histone modification
17
broad histone mark
15
narrow histone mark
3
control
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
212
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
125
bigWig
122
bam
91
tsv
41
fastq
23
bed bedMethyl
23
bigBed bedMethyl
21
bed narrowPeak
16
bigBed narrowPeak
4
bed bed3+
4
hdf5
1
csv
Organism
149
Homo sapiens
Biosample type
77
tissue
72
primary cell
Organ
53
epithelium
46
pancreas
25
heart
18
brain
18
connective tissue
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
149
AMP
Genome assembly (visualization)
131
hg19
119
GRCh38
Lab
149
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
149 results
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Clear Filters
total RNA-seq
ATAC-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
primary cell
pancreatic beta cell
10
4
pancreatic alpha cell
10
3
pancreatic ductal cell
4
4
pancreatic acinar cell
2
3
cerebellar granule cell
2
+ See 25 more…
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