Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
total RNA-seq
18
ATAC-seq
17
ChIP-seq
1
Hi-C
1
single cell RNA-seq
Assay category
27
Transcription
18
DNA accessibility
17
DNA binding
1
3D chromatin structure
Target of assay
32
histone
32
histone modification
17
broad histone mark
narrow histone mark
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
205
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
59
fastq
58
bam
57
bigWig
31
bed narrowPeak
26
tsv
14
bigBed narrowPeak
1
bed broadPeak
1
bedpe
1
csv
1
hic
Organism
63
Homo sapiens
Biosample type
58
primary cell
5
tissue
Organ
62
pancreas
50
epithelium
Project
63
AMP
Genome assembly (visualization)
60
hg19
59
GRCh38
Lab
58
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
17
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
63 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic beta cell
10
4
pancreatic ductal cell
4
4
6
pancreatic alpha cell
10
3
pancreatic acinar cell
2
3
4
pancreatic endocrine cell
7
+ See 1 more…
tissue
islet of Langerhans
4
1
See all biosamples
Download