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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ATAC-seq
73
total RNA-seq
17
ChIP-seq
1
single cell RNA-seq
Assay category
114
DNA accessibility
74
Transcription
17
DNA binding
Target of assay
32
histone
32
histone modification
17
broad histone mark
narrow histone mark
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
44
June, 2019
43
April, 2018
37
August, 2017
31
July, 2019
25
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
147
bam
147
bigWig
71
tsv
58
fastq
31
bed narrowPeak
14
bigBed narrowPeak
1
csv
Organism
205
Homo sapiens
Biosample type
205
primary cell
166
tissue
1
cell line
Organ
57
pancreas
50
epithelium
Project
160
AMP
45
T1D
Genome assembly (visualization)
147
hg19
102
GRCh38
Lab
160
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
17
missing controlled_by
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
205 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
pancreatic beta cell
4
10
pancreatic ductal cell
4
4
6
pancreatic alpha cell
3
10
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