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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
43
single cell RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
ATAC-seq
8
Hi-C
2
FAIRE-seq
Assay category
121
Transcription
27
DNA methylation
8
3D chromatin structure
2
DNA accessibility
Target of assay
3
control
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
79
bigWig
76
bam
65
tsv
38
fastq
23
bed bedMethyl
23
bigBed bedMethyl
19
zippedFastqFolder
4
bed bed3+
4
hdf5
2
bed narrowPeak
2
bigBed narrowPeak
Organism
158
Homo sapiens
Biosample type
87
primary cell
71
tissue
Organ
29
epithelium
22
pancreas
21
heart
18
connective tissue
17
brain
12
adipose tissue
11
kidney
10
liver
10
musculature of body
10
vasculature
9
blood vessel
5
limb
2
artery
2
pericardium
1
eye
Project
102
AMP
56
HPAP
Genome assembly (visualization)
86
hg19
73
GRCh38
Lab
102
AMP-T2D consortium
56
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
158 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
FAIRE-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
+ See 23 more…
tissue
heart left ventricle
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 24 more…
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