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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
9
DNase-seq
7
WGBS
3
ATAC-seq
1
FAIRE-seq
Assay category
63
DNA binding
13
DNA accessibility
7
DNA methylation
Target of assay
63
transcription factor
21
RNA binding protein
15
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
574
February, 2021
335
November, 2017
316
May, 2021
278
August, 2017
260
May, 2020
217
October, 2019
210
June, 2019
164
July, 2018
125
August, 2021
100
July, 2019
97
May, 2019
80
February, 2023
80
November, 2018
77
December, 2017
72
September, 2018
65
April, 2019
59
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
3
September, 2020
1
March, 2023
Available data
83
bigWig
83
fastq
80
bam
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
83
Homo sapiens
Biosample type
57
cell line
23
tissue
3
primary cell
Organ
52
liver
12
blood
12
bodily fluid
10
pancreas
6
spleen
3
epithelium
2
brain
1
adipose tissue
1
connective tissue
Project
80
AMP
3
HPAP
Genome assembly (visualization)
82
GRCh38
71
hg19
Lab
80
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
83 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
ATAC-seq
FAIRE-seq
cell line
HepG2
44
1
GM12878
12
tissue
liver
4
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
primary cell
pancreatic alpha cell
2
pancreatic beta cell
1
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