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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
8
DNase-seq
7
WGBS
3
ATAC-seq
Assay category
63
DNA binding
11
DNA accessibility
7
DNA methylation
Target of assay
63
transcription factor
21
RNA binding protein
15
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
280
November, 2017
276
May, 2021
233
August, 2017
209
June, 2019
207
May, 2020
207
October, 2019
182
February, 2021
164
July, 2018
105
August, 2021
96
May, 2019
78
November, 2018
77
December, 2017
72
September, 2018
67
July, 2019
64
April, 2019
56
November, 2019
49
April, 2018
42
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
13
October, 2017
11
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
81
bigWig
81
fastq
78
bam
71
bed narrowPeak
71
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
81
Homo sapiens
Biosample type
57
cell line
21
tissue
3
primary cell
Organ
52
liver
12
blood
12
bodily fluid
9
pancreas
6
spleen
3
epithelium
2
brain
adipose tissue
1
connective tissue
Project
78
AMP
3
HPAP
Genome assembly (visualization)
81
GRCh38
70
hg19
Lab
78
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
81 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
ATAC-seq
cell line
HepG2
44
1
GM12878
12
tissue
liver
4
2
spleen
3
1
2
body of pancreas
2
2
brain
2
pancreas
2
+ See 1 more…
primary cell
pancreatic alpha cell
2
pancreatic beta cell
1
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