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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
43
single cell RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
9
ATAC-seq
2
FAIRE-seq
Assay category
121
Transcription
27
DNA methylation
11
DNA accessibility
3D chromatin structure
Target of assay
3
control
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
316
August, 2021
309
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
100
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
54
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
84
bigWig
82
bam
65
tsv
41
fastq
23
bed bedMethyl
23
bigBed bedMethyl
19
zippedFastqFolder
7
bed narrowPeak
2
bigBed narrowPeak
Organism
159
Homo sapiens
Biosample type
86
primary cell
73
tissue
Organ
30
epithelium
25
heart
25
pancreas
17
connective tissue
15
brain
12
adipose tissue
11
kidney
10
vasculature
9
blood vessel
9
liver
6
musculature of body
3
artery
2
pericardium
1
eye
1
limb
Project
100
AMP
59
HPAP
Genome assembly (visualization)
87
hg19
82
GRCh38
Lab
100
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
159 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
FAIRE-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
+ See 19 more…
tissue
heart left ventricle
2
1
4
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 25 more…
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