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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
single cell RNA-seq
31
ChIP-seq
16
total RNA-seq
Assay category
DNA accessibility
65
Transcription
31
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
38
fastq
31
bam
23
bed narrowPeak
23
bigBed narrowPeak
23
bigWig
19
zippedFastqFolder
Organism
96
Homo sapiens
Biosample type
87
primary cell
9
tissue
Organ
22
epithelium
16
pancreas
12
connective tissue
10
musculature of body
9
lung
5
heart
3
eye
3
kidney
Project
56
HPAP
31
AMP
9
LungMap
Genome assembly (visualization)
23
GRCh38
23
hg19
Lab
56
Klaus Kaestner, Upenn
31
AMP-T2D consortium
9
Xin Sun, UCSD
Audit category:
22
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
96 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
15
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
5
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tissue
lung
9
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