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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
44
ChIP-seq
40
single cell RNA-seq
36
total RNA-seq
29
ATAC-seq
2
Hi-C
Assay category
216
DNA accessibility
76
Transcription
44
DNA binding
2
3D chromatin structure
Target of assay
29
histone
29
histone modification
15
narrow histone mark
14
broad histone mark
10
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
277
bam
247
bed narrowPeak
244
bigWig
210
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
41
fastq
20
tsv
19
zippedFastqFolder
2
bedpe bed3+
2
hic
Organism
338
Homo sapiens
Biosample type
203
tissue
114
primary cell
16
cell line
5
in vitro differentiated cells
Organ
81
kidney
78
pancreas
55
epithelium
43
musculature of body
35
heart
32
limb
30
brain
19
connective tissue
18
ureter
7
eye
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
2
liver
Project
279
AMP
59
HPAP
Genome assembly (visualization)
270
GRCh38
246
hg19
Lab
279
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
48
inconsistent ontology term
BIOSAMPLE
ASSAY
338 results
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Clear Filters
DNase-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
Hi-C
tissue
islet of Langerhans
19
19
1
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
+ See 20 more…
cell line
EndoC_BH1
13
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
See all biosamples
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