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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
17
total RNA-seq
13
ChIP-seq
9
ATAC-seq
1
Hi-C
Assay category
57
Transcription
13
DNA binding
9
DNA accessibility
1
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
41
fastq
20
bam
19
zippedFastqFolder
17
bed narrowPeak
15
bigWig
1
bedpe bed3+
1
hic
1
tsv
Organism
80
Homo sapiens
Biosample type
59
primary cell
tissue
16
cell line
5
in vitro differentiated cells
Organ
35
epithelium
35
pancreas
Project
59
HPAP
21
AMP
Genome assembly (visualization)
21
GRCh38
19
hg19
Lab
59
Klaus Kaestner, Upenn
21
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
80 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
cell line
EndoC_BH1
1
13
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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