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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
total RNA-seq
106
ATAC-seq
41
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
Assay category
150
Transcription
108
DNA accessibility
3
3D chromatin structure
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
117
fastq
65
bed narrowPeak
19
zippedFastqFolder
16
tsv
10
bed bed3
8
txt
6
bigWig
4
bed bed3+
3
bed bedgraph
3
bedpe bed3+
3
cool
3
hic
Organism
266
Homo sapiens
Biosample type
150
primary cell
95
tissue
16
in vitro differentiated cells
7
cell line
Organ
78
pancreas
74
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
1
brain
Project
138
HPAP
107
AMP
23
T1D
Genome assembly (visualization)
48
hg19
38
GRCh38
Lab
138
Klaus Kaestner, Upenn
104
AMP-T2D consortium
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
268 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
primary cell
pancreatic alpha cell
42
2
1
Langerhans cell
40
exocrine cell
39
pancreatic beta cell
11
1
1
gabaergic neuron
3
+ See 4 more…
tissue
coronary artery
35
islet of Langerhans
5
11
2
retina
2
15
pigmented layer of retina
2
12
acetabular part of hip bone
1
1
+ See 6 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
MIN6
1
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