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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
17
ATAC-seq
4
total RNA-seq
2
Capture-C
1
pCHi-C
Assay category
19
DNA binding
17
DNA accessibility
4
Transcription
Target of assay
12
histone
12
histone modification
8
broad histone mark
7
control
4
narrow histone mark
Date released
19
August, 2017
13
February, 2023
4
August, 2021
4
February, 2021
2
October, 2019
1
August, 2018
Available data
14
tagAlign
6
bed bed3+
6
fastq
5
bam
5
bed bed3
4
bed bedgraph
4
bigWig
2
bed narrowPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
43
Homo sapiens
Biosample type
67
tissue
43
in vitro differentiated cells
7
primary cell
1
stem cell
Organ
43
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
43
AMP
Genome assembly (visualization)
73
hg19
GRCh38
Lab
39
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
organ_slims!
blood
assembly!
GRCh38
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
pCHi-C
in vitro differentiated cells
adipocyte
19
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
white fat cell
1
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