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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
DNase-seq
4
Hi-C
3
ChIP-seq
2
total RNA-seq
1
pCHi-C
Assay category
22
DNA accessibility
4
3D chromatin structure
3
DNA binding
2
Transcription
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
19
June, 2019
3
August, 2021
3
October, 2022
2
May, 2021
2
October, 2019
1
February, 2021
1
July, 2019
1
November, 2020
Available data
593
bigWig
592
bam
400
fastq
284
bed narrowPeak
267
tsv
153
zippedFastqFolder
100
tagAlign
98
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
1
tar
Organism
32
Homo sapiens
Biosample type
178
tissue
32
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
24
epithelium
10
kidney
brain
8
connective tissue
8
vasculature
6
blood vessel
6
liver
3
heart
3
pancreas
2
vein
1
eye
1
musculature of body
Project
29
AMP
3
HPAP
Genome assembly (visualization)
25
GRCh38
25
hg19
Lab
27
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Kyle Gaulton, UCSD
Audit category:
3
audit script error
3
inconsistent ontology term
organ_slims!
brain
BIOSAMPLE
ASSAY
32 results
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DNase-seq
Hi-C
ChIP-seq
total RNA-seq
pCHi-C
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
osteoblast
1
1
cardiac muscle cell
1
endothelial cell of hepatic sinusoid
1
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
hepatic stellate cell
1
kidney capillary endothelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
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