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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
Transcription
155
DNA binding
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
44
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
54
August, 2017
50
May, 2020
48
December, 2017
20
May, 2022
7
November, 2018
5
October, 2019
2
March, 2020
1
July, 2019
Available data
136
bam
113
bed narrowPeak
113
bigWig
83
fastq
70
tagAlign
49
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tsv
Organism
187
Homo sapiens
Biosample type
387
cell line
187
tissue
15
in vitro differentiated cells
8
primary cell
Organ
244
brain
214
pancreas
204
heart
187
liver
184
kidney
120
blood vessel
120
vasculature
115
limb
96
bone element
connective tissue
89
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
187
AMP
Genome assembly (visualization)
116
hg19
86
GRCh38
Lab
167
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
organ_slims!
connective tissue
assay_slims!
Transcription
BIOSAMPLE
ASSAY
187 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
pCHi-C
tissue
liver
145
20
2
3
1
1
1
right lobe of liver
10
1
2
1
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