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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
DNase-seq
2
Hi-C
2
total RNA-seq
1
pCHi-C
Assay category
11
DNA accessibility
2
3D chromatin structure
2
Transcription
Date released
10
June, 2019
2
July, 2019
2
May, 2021
1
February, 2021
1
November, 2020
Available data
381
bigWig
366
bam
189
bed narrowPeak
171
fastq
153
tsv
96
tagAlign
73
zippedFastqFolder
48
bigBed narrowPeak
27
bed broadPeak
27
bigBed broadPeak
16
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
16
Homo sapiens
Biosample type
200
tissue
25
in vitro differentiated cells
16
primary cell
3
cell line
3
stem cell
Organ
epithelium
10
kidney
8
brain
8
connective tissue
8
vasculature
blood vessel
6
liver
3
heart
2
vein
1
eye
1
musculature of body
Project
16
AMP
Genome assembly (visualization)
15
hg19
11
GRCh38
Lab
14
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
organ_slims!
epithelium
blood vessel
BIOSAMPLE
ASSAY
16 results
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DNase-seq
Hi-C
total RNA-seq
pCHi-C
primary cell
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain pericyte
1
1
osteoblast
1
1
astrocyte of the hippocampus
1
cardiac muscle cell
1
hepatic stellate cell
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
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