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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
200
total RNA-seq
187
single cell RNA-seq
100
ATAC-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
100
DNA accessibility
Date released
May, 2020
39
May, 2022
14
September, 2018
13
May, 2021
12
February, 2023
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
October, 2019
1
February, 2021
1
November, 2020
Available data
39
bam
39
bed narrowPeak
39
zippedFastqFolder
33
bigWig
32
fastq
22
bigBed narrowPeak
12
tsv
1
bed bed3
Organism
100
Homo sapiens
Biosample type
260
tissue
100
primary cell
42
in vitro differentiated cells
29
cell line
Organ
72
epithelium
71
pancreas
2
connective tissue
1
liver
Project
51
AMP
49
HPAP
Genome assembly (visualization)
49
GRCh38
39
hg19
Lab
51
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
8
inconsistent ontology term
organ_slims!
esophagus
month_released!
May, 2020
BIOSAMPLE
ASSAY
100 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
monocyte
13
pancreatic acinar cell
9
pancreatic ductal cell
4
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
osteoblast
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
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