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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
ChIP-seq
52
total RNA-seq
5
ATAC-seq
3
Hi-C
2
DNase-seq
1
pCHi-C
Assay category
403
DNA binding
52
Transcription
7
DNA accessibility
3
3D chromatin structure
Target of assay
348
transcription factor
85
recombinant protein
62
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
54
November, 2018
29
February, 2021
27
December, 2018
23
August, 2021
20
January, 2019
20
October, 2019
14
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
461
bigWig
445
bam
388
bed narrowPeak
367
fastq
351
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
53
tsv
13
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
466
Homo sapiens
Biosample type
1642
tissue
618
primary cell
466
cell line
296
in vitro differentiated cells
3
stem cell
Organ
330
liver
64
artery
64
blood vessel
heart
64
vasculature
58
pancreas
55
blood
55
bodily fluid
52
epithelium
12
kidney
8
embryo
Project
462
AMP
4
T1D
Genome assembly (visualization)
466
hg19
400
GRCh38
Lab
451
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
60
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
organ_slims!
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BIOSAMPLE
ASSAY
466 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
322
5
1
1
1
GM12878
54
1
EndoC_BH1
13
33
3
1
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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