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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
pCHi-C
7
total RNA-seq
5
Hi-C
2
ATAC-seq
2
ChIP-seq
Assay category
7
Transcription
5
3D chromatin structure
2
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
545
February, 2021
284
August, 2017
234
October, 2019
193
May, 2020
137
August, 2021
136
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
59
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
23
April, 2019
22
February, 2020
22
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
23
tsv
9
bigWig
7
bam
5
bedpe bed3+
5
hic
2
bed narrowPeak
Organism
33
Homo sapiens
Biosample type
33
tissue
11
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
9
pancreas
heart
5
musculature of body
3
blood vessel
3
liver
3
vasculature
2
brain
2
intestine
1
adipose tissue
1
adrenal gland
1
connective tissue
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
29
AMP
4
T1D
Genome assembly (visualization)
14
hg19
7
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
heart
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
33 results
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pCHi-C
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
2
2
2
psoas muscle
1
2
2
aorta
1
1
1
liver
1
1
1
pancreas
1
1
1
Ammon's horn
1
adipose tissue
1
adrenal gland
1
bladder (urinary bladder)
1
dorsolateral prefrontal cortex
1
esophagus
1
gastric (mucosa of stomach)
1
lung
1
ovary
1
sigmoid colon
1
small intestine
1
spleen
1
thymus
1
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