Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
15
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
Hi-C
1
STARR-seq
Assay category
33
Transcription
19
DNA accessibility
15
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
6
November, 2020
5
March, 2020
3
August, 2021
Available data
49
bam
48
bigWig
34
tsv
14
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
77
Homo sapiens
Biosample type
115
in vitro differentiated cells
91
tissue
77
cell line
46
primary cell
1
stem cell
Organ
76
epithelium
76
pancreas
kidney
Project
73
AMP
4
T1D
Genome assembly (visualization)
50
hg19
47
GRCh38
Lab
70
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
77
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
organ_slims!
kidney
BIOSAMPLE
ASSAY
77 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
Hi-C
STARR-seq
cell line
EndoC_BH1
33
19
15
6
2
1
Synthesized DNA
1
See all biosamples
Download