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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
85
ChIP-seq
12
ATAC-seq
2
DNase-seq
2
Hi-C
Assay category
99
Transcription
85
DNA binding
14
DNA accessibility
2
3D chromatin structure
Target of assay
64
transcription factor
19
histone
19
histone modification
11
RNA binding protein
10
chromatin remodeller
10
narrow histone mark
9
broad histone mark
7
recombinant protein
Date released
91
February, 2021
27
December, 2018
20
October, 2019
15
January, 2019
14
November, 2019
12
November, 2018
8
August, 2021
7
March, 2020
5
May, 2021
1
January, 2018
Available data
195
bam
190
bigWig
100
tsv
96
bed narrowPeak
62
bigBed narrowPeak
54
fastq
5
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
200
Homo sapiens
Biosample type
1487
tissue
615
primary cell
283
in vitro differentiated cells
200
cell line
3
stem cell
Organ
liver
64
artery
64
blood vessel
64
heart
64
vasculature
58
pancreas
55
blood
55
bodily fluid
52
epithelium
12
kidney
8
embryo
Project
196
AMP
4
T1D
Genome assembly (visualization)
200
hg19
196
GRCh38
Lab
200
AMP-T2D consortium
Audit category:
60
inconsistent ontology term
1
inconsistent control
Audit category:
1
inconsistent assembly
organ_slims!
liver
BIOSAMPLE
ASSAY
200 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
cell line
smooth muscle cell of the coronary artery
52
4
8
GM12878
54
1
EndoC_BH1
33
13
3
1
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
1
3
RCC 7860 HIF2a over-expression
1
2
RCC 7860 vector
1
2
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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