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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ATAC-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
19
DNA accessibility
2
3D chromatin structure
2
Transcription
Target of assay
3
control
3
nucleotide modification
Date released
16
May, 2021
6
February, 2023
6
March, 2020
6
November, 2020
5
August, 2021
2
March, 2023
1
January, 2018
1
November, 2019
1
October, 2019
1
October, 2022
Available data
bam
190
bigWig
104
tsv
96
bed narrowPeak
62
bigBed narrowPeak
60
fastq
8
tagAlign
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
1
txt
Organism
41
Homo sapiens
Biosample type
757
tissue
477
primary cell
103
in vitro differentiated cells
45
cell line
7
stem cell
Organ
liver
29
pancreas
28
epithelium
4
kidney
1
blood
1
bodily fluid
1
mammary gland
Project
38
AMP
5
T1D
2
community
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
29
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
2
Anna Gloyn, Oxford
Audit category:
30
inconsistent ontology term
Audit category:
1
inconsistent assembly
organ_slims!
liver
files.file_type!
bam
BIOSAMPLE
ASSAY
45 results
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Clear Filters
ATAC-seq
MeRIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
18
6
3
2
1
2
1
EndoC-BH1
1
1
HEK293T
2
GM12878
1
MCF-7
1
MIN6
1
Panc1
1
RCC 7860 VHL
1
RCC 7860 vector
1
Synthesized DNA
1
fibroblast cell line
1
See all biosamples
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