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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
347
ChIP-seq
1
DNase-seq
Assay category
347
DNA binding
1
DNA accessibility
Target of assay
328
transcription factor
81
recombinant protein
61
RNA binding protein
30
chromatin remodeller
14
histone
14
histone modification
7
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
1
October, 2019
Available data
519
bam
466
bigWig
427
fastq
383
bed narrowPeak
348
bigBed narrowPeak
85
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
txt
1
vcf
Organism
348
Homo sapiens
Biosample type
499
tissue
348
cell line
87
primary cell
17
in vitro differentiated cells
Organ
293
liver
54
blood
54
bodily fluid
pancreas
1
epithelium
1
kidney
Project
348
AMP
Genome assembly (visualization)
344
hg19
316
GRCh38
Lab
348
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
organ_slims!
pancreas
BIOSAMPLE
ASSAY
348 results
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ChIP-seq
DNase-seq
cell line
HepG2
293
GM12878
54
glomerular visceral epithelial cell
1
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