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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
329
ChIP-seq
2
DNase-seq
Assay category
329
DNA binding
2
DNA accessibility
Target of assay
313
transcription factor
80
recombinant protein
55
RNA binding protein
19
chromatin remodeller
11
histone
11
histone modification
6
narrow histone mark
5
broad histone mark
2
other context
2
other post-translational modification
Date released
230
November, 2017
51
November, 2018
27
December, 2018
15
January, 2019
8
October, 2019
Available data
556
bam
496
bigWig
401
fastq
380
bed narrowPeak
331
bigBed narrowPeak
119
tsv
46
bed broadPeak
46
bigBed broadPeak
9
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
331
Homo sapiens
Biosample type
555
tissue
331
cell line
108
primary cell
17
in vitro differentiated cells
Organ
269
liver
54
blood
54
bodily fluid
7
pancreas
1
epithelium
1
kidney
Project
331
AMP
Genome assembly (visualization)
327
hg19
301
GRCh38
Lab
331
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
organ_slims!
pituitary gland
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
331 results
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ChIP-seq
DNase-seq
cell line
HepG2
269
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
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