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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
Assay category
100
DNA binding
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
37
control
9
RNA binding protein
2
chromatin remodeller
Date released
37
August, 2017
21
May, 2021
16
February, 2018
14
August, 2021
12
December, 2017
Available data
79
bam
78
bed narrowPeak
78
bigWig
65
fastq
26
tagAlign
bigBed narrowPeak
8
bed bed3+
Organism
100
Homo sapiens
Biosample type
316
tissue
190
primary cell
100
in vitro differentiated cells
18
cell line
2
stem cell
Organ
37
connective tissue
12
embryo
3
epithelium
1
pancreas
Project
100
AMP
Genome assembly (visualization)
66
GRCh38
65
hg19
Lab
80
AMP-T2D consortium
20
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
organ_slims!
spleen
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
pancreatic endoderm
10
definitive endodermal cell
4
primitive gut cell
4
Hepatic endoderm
2
Posterior foregut
2
endocrine cell
2
posterior foregut
2
pancreatic PP cell
1
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