Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
total RNA-seq
13
ChIP-seq
6
DNase-seq
4
single cell RNA-seq
pCHi-C
2
ATAC-seq
1
Hi-C
1
RRBS
Assay category
71
Transcription
13
DNA binding
8
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
9
histone
9
histone modification
5
narrow histone mark
4
broad histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
60
February, 2021
17
June, 2019
6
July, 2019
6
November, 2020
2
April, 2018
2
July, 2018
1
October, 2019
Available data
91
bam
88
bigWig
71
tsv
17
bed narrowPeak
15
bigBed narrowPeak
7
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
94
Homo sapiens
Biosample type
in vitro differentiated cells
59
tissue
35
primary cell
Organ
942
pancreas
773
liver
583
connective tissue
500
epithelium
adipose tissue
389
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
8
embryo
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
94
AMP
Genome assembly (visualization)
89
hg19
88
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
organ_slims!
adipose tissue
assay_title!
pCHi-C
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
94 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
Hi-C
RRBS
tissue
bone tissue
58
islet of Langerhans
1
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
1
2
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
+ See 5 more…
See all biosamples
Download