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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
832
ChIP-seq
634
total RNA-seq
254
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
832
DNA binding
Target of assay
596
histone modification
595
histone
312
narrow histone mark
283
broad histone mark
161
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
Date released
195
October, 2019
126
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
51
October, 2018
50
May, 2020
46
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
683
bam
594
bigWig
586
bed narrowPeak
369
bigBed narrowPeak
230
tagAlign
181
fastq
34
bed broadPeak
24
bed bed3+
1
tagAlign bed3+
Organism
825
Homo sapiens
Biosample type
832
tissue
454
cell line
278
primary cell
195
in vitro differentiated cells
3
stem cell
Organ
209
brain
153
liver
123
heart
117
pancreas
74
connective tissue
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
830
AMP
2
T1D
Genome assembly (visualization)
570
GRCh38
508
hg19
Lab
792
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
25
inconsistent control
2
inconsistent ontology term
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
adipose tissue
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
832 results
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Clear Filters
ChIP-seq
tissue
liver
143
islet of Langerhans
71
left cardiac atrium
40
body of pancreas
35
heart left ventricle
35
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