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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
792
ChIP-seq
633
total RNA-seq
243
ATAC-seq
176
DNase-seq
174
single cell RNA-seq
86
RNA microarray
23
pCHi-C
21
WGBS
18
snATAC-seq
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
821
Transcription
792
DNA binding
441
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
559
histone modification
558
histone
295
narrow histone mark
263
broad histone mark
163
control
72
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
241
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
159
February, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
76
February, 2023
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
39
May, 2021
39
November, 2019
35
March, 2020
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1465
bam
1307
bigWig
929
bed narrowPeak
677
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2210
Homo sapiens
Biosample type
2218
tissue
882
primary cell
653
cell line
393
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
adipose tissue
475
pancreas
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2152
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1395
GRCh38
1329
hg19
Lab
1933
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
25
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
adipose tissue
award.project!
T1D
BIOSAMPLE
ASSAY
2218 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
69
291
57
1
4
1
3
1
1
4
liver
145
167
20
2
1
1
3
1
1
1
kidney
27
49
75
13
64
6
1
1
1
bone element
84
heart left ventricle
35
3
2
3
18
1
4
1
1
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