Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
2
pCHi-C
Assay category
14
3D chromatin structure
Date released
11
March, 2020
3
October, 2019
2
November, 2019
Available data
2343
bam
2119
bigWig
1495
bed narrowPeak
923
bigBed narrowPeak
921
tsv
905
fastq
290
tagAlign
270
bed broadPeak
234
bigBed broadPeak
230
bed bed3+
161
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
16
bedpe bed3+
15
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
hdf5
1
tagAlign bed3+
Organism
16
Homo sapiens
Biosample type
9
tissue
6
in vitro differentiated cells
primary cell
1
cell line
Organ
3
heart
3
pancreas
2
musculature of body
adipose tissue
1
blood vessel
1
connective tissue
1
epithelium
1
liver
1
vasculature
Project
16
AMP
Genome assembly (visualization)
16
hg19
Lab
16
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
organ_slims!
adipose tissue
biosample_type!
primary cell
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
16 results
search-icon
table-tab-icon
Clear Filters
Hi-C
pCHi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
cell line
EndoC_BH1
1
See all biosamples
Download