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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
Hi-C
Assay category
7
3D chromatin structure
Date released
March, 2020
3
October, 2019
2
August, 2021
2
November, 2019
Available data
2327
bam
2113
bigWig
1506
bed narrowPeak
923
bigBed narrowPeak
905
fastq
887
tsv
290
tagAlign
270
bed broadPeak
234
bigBed broadPeak
230
bed bed3+
161
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
bed bed3
8
hic
7
bed bedgraph
7
bedpe bed3+
6
csv
3
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
7
Homo sapiens
Biosample type
primary cell
3
tissue
2
cell line
2
in vitro differentiated cells
Organ
3
pancreas
adipose tissue
1
connective tissue
1
epithelium
1
heart
1
liver
Project
7
AMP
Genome assembly (visualization)
6
hg19
Lab
5
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
adipose tissue
biosample_type!
primary cell
month_released!
March, 2020
BIOSAMPLE
ASSAY
7 results
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Hi-C
tissue
islet of Langerhans
2
heart
1
cell line
EndoC_BH1
1
HepG2
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
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