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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1519
ChIP-seq
889
total RNA-seq
325
ATAC-seq
179
DNase-seq
176
single cell RNA-seq
86
RNA microarray
37
pCHi-C
28
snATAC-seq
24
Hi-C
22
WGBS
14
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
179
DNA accessibility
Date released
162
June, 2019
8
November, 2018
6
October, 2019
3
August, 2017
Available data
178
bam
178
bed narrowPeak
178
bigBed narrowPeak
178
bigWig
176
bed broadPeak
176
bigBed broadPeak
175
bed bed3+
10
fastq
Organism
179
Homo sapiens
Biosample type
176
tissue
primary cell
2
cell line
1
in vitro differentiated cells
Organ
69
kidney
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
8
pancreas
5
blood vessel
5
vasculature
4
artery
4
liver
3
connective tissue
3
eye
adipose tissue
2
nerve
1
epithelium
1
spleen
Project
179
AMP
Genome assembly (visualization)
178
GRCh38
162
hg19
Lab
179
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
adipose tissue
large intestine
biosample_type!
primary cell
BIOSAMPLE
ASSAY
179 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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