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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
699
ChIP-seq
Assay category
699
DNA binding
Target of assay
700
histone modification
699
histone
443
transcription factor
367
narrow histone mark
331
broad histone mark
284
control
95
RNA binding protein
89
recombinant protein
31
chromatin remodeller
5
nucleotide modification
4
other context
4
other post-translational modification
Date released
175
October, 2019
103
August, 2017
89
May, 2019
65
November, 2017
60
April, 2019
35
May, 2024
31
December, 2017
30
October, 2018
27
May, 2020
22
May, 2021
17
August, 2021
16
February, 2018
10
November, 2019
9
October, 2017
7
January, 2019
3
March, 2020
Available data
636
bigWig
632
bed narrowPeak
580
bam
343
bigBed narrowPeak
216
tagAlign
155
fastq
bed broadPeak
22
bed bed3+
14
bigBed broadPeak
1
tagAlign bed3+
Organism
699
Homo sapiens
Biosample type
561
tissue
primary cell
112
in vitro differentiated cells
24
cell line
2
stem cell
Organ
175
brain
95
heart
85
liver
81
pancreas
69
connective tissue
54
blood vessel
54
vasculature
49
limb
adipose tissue
27
epithelium
24
nerve
20
artery
20
kidney
12
embryo
12
musculature of body
6
spleen
4
gonad
4
ovary
2
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
695
AMP
4
T1D
Genome assembly (visualization)
578
GRCh38
503
hg19
Lab
641
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
20
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
8
missing controlled_by
Audit category:
15
inconsistent control read length
organ_slims!
adipose tissue
biosample_type!
primary cell
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
699 results
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Clear Filters
ChIP-seq
tissue
liver
64
islet of Langerhans
45
left cardiac atrium
35
heart left ventricle
24
tibial nerve
24
+ See 98 more…
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
10
+ See 7 more…
cell line
EndoC_BH1
12
Panc1
7
HepG2
4
GM12878
1
stem cell
hESC
2
See all biosamples
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