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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
722
ChIP-seq
Assay category
722
DNA binding
Target of assay
723
histone modification
722
histone
487
transcription factor
378
narrow histone mark
343
broad histone mark
280
control
99
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
175
October, 2019
109
August, 2017
85
November, 2017
83
May, 2019
60
April, 2019
35
May, 2024
31
December, 2017
30
October, 2018
27
May, 2020
22
May, 2021
17
August, 2021
16
February, 2018
12
October, 2017
10
November, 2019
7
January, 2019
3
March, 2020
Available data
617
bigWig
613
bed narrowPeak
574
bam
337
bigBed narrowPeak
203
tagAlign
155
fastq
35
bed broadPeak
22
bed bed3+
14
bigBed broadPeak
1
tagAlign bed3+
Organism
716
Homo sapiens
Biosample type
570
tissue
primary cell
112
in vitro differentiated cells
38
cell line
2
stem cell
Organ
184
brain
99
liver
95
heart
93
pancreas
70
connective tissue
54
blood vessel
54
vasculature
49
limb
adipose tissue
27
epithelium
musculature of body
24
nerve
20
artery
20
kidney
12
embryo
6
spleen
4
gonad
4
ovary
2
eye
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
718
AMP
4
T1D
Genome assembly (visualization)
599
GRCh38
532
hg19
Lab
664
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
20
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
26
inconsistent control read length
1
inconsistent assembly
organ_slims!
adipose tissue
musculature of body
biosample_type!
primary cell
BIOSAMPLE
ASSAY
722 results
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Clear Filters
ChIP-seq
tissue
liver
64
islet of Langerhans
51
left cardiac atrium
35
heart left ventricle
24
tibial nerve
24
+ See 96 more…
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
10
+ See 7 more…
cell line
HepG2
18
EndoC_BH1
12
Panc1
7
GM12878
1
stem cell
hESC
2
See all biosamples
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