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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
846
ChIP-seq
Assay category
846
DNA binding
Target of assay
748
histone modification
747
histone
487
transcription factor
387
narrow histone mark
359
broad histone mark
284
control
99
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
175
October, 2019
134
August, 2017
119
November, 2017
93
May, 2019
64
April, 2019
40
May, 2024
36
October, 2018
35
December, 2017
27
May, 2020
27
May, 2021
21
November, 2018
18
August, 2021
16
February, 2018
13
January, 2019
12
October, 2017
11
November, 2019
3
March, 2020
2
December, 2018
Available data
727
bigWig
722
bed narrowPeak
668
bam
421
bigBed narrowPeak
234
fastq
216
tagAlign
52
bed broadPeak
24
bed bed3+
18
bigBed broadPeak
1
tagAlign bed3+
1
tar
Organism
840
Homo sapiens
Biosample type
618
tissue
primary cell
123
in vitro differentiated cells
103
cell line
2
stem cell
Organ
184
brain
157
liver
105
heart
102
pancreas
79
connective tissue
57
blood vessel
57
vasculature
49
limb
adipose tissue
30
epithelium
25
musculature of body
24
nerve
21
artery
21
kidney
12
embryo
11
blood
11
bodily fluid
6
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
842
AMP
4
T1D
Genome assembly (visualization)
690
GRCh38
636
hg19
Lab
777
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
32
inconsistent control read length
3
inconsistent control run_type
1
inconsistent assembly
organ_slims!
adipose tissue
biosample_type!
primary cell
BIOSAMPLE
ASSAY
846 results
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Clear Filters
ChIP-seq
tissue
liver
65
islet of Langerhans
53
left cardiac atrium
40
heart left ventricle
27
tibial nerve
24
+ See 98 more…
in vitro differentiated cells
adipocyte
41
embryonic stem cell
27
hepatocyte
14
neural progenitor cell
14
pancreatic endoderm
10
+ See 7 more…
cell line
HepG2
72
EndoC_BH1
13
GM12878
11
Panc1
7
stem cell
hESC
2
See all biosamples
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