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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1073
ChIP-seq
886
total RNA-seq
454
ATAC-seq
361
single cell RNA-seq
207
DNase-seq
86
RNA microarray
84
snATAC-seq
68
WGBS
41
pCHi-C
26
Hi-C
21
RRBS
15
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNAme array
Assay category
1262
Transcription
1073
DNA binding
750
DNA accessibility
90
DNA methylation
26
3D chromatin structure
Target of assay
798
histone modification
797
histone
412
narrow histone mark
385
broad histone mark
198
control
82
transcription factor
28
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
340
May, 2020
286
August, 2017
275
October, 2019
246
May, 2021
232
August, 2021
217
June, 2019
207
February, 2021
200
May, 2022
182
February, 2023
168
July, 2018
120
May, 2019
96
July, 2019
91
November, 2017
80
April, 2019
73
September, 2018
59
September, 2020
53
October, 2018
49
April, 2018
48
December, 2017
47
September, 2023
40
March, 2020
39
November, 2019
26
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
January, 2018
1
March, 2023
Available data
2074
bam
1920
bigWig
1226
bed narrowPeak
945
tsv
743
fastq
660
bigBed narrowPeak
330
tagAlign
259
bed broadPeak
236
bed bed3+
223
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
3327
Homo sapiens
Biosample type
2249
tissue
1086
primary cell
662
cell line
393
in vitro differentiated cells
10
stem cell
Organ
851
pancreas
586
connective tissue
adipose tissue
421
epithelium
375
liver
335
kidney
286
brain
286
heart
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2709
AMP
324
HPAP
235
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
1957
hg19
1931
GRCh38
Lab
2459
AMP-T2D consortium
324
Klaus Kaestner, Upenn
291
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
144
inconsistent ontology term
40
audit script error
27
inconsistent control
Audit category:
58
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
3335 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
71
298
68
1
7
4
3
1
1
4
liver
145
167
20
1
2
3
1
1
1
1
kidney
27
49
75
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
4
1
1
1
+ See 169 more…
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
+ See 93 more…
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