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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
5
Hi-C
Assay category
64
DNA accessibility
5
3D chromatin structure
Date released
64
August, 2021
4
July, 2019
1
October, 2019
Available data
2950
bam
2704
bigWig
1764
bed narrowPeak
1314
fastq
1199
tsv
1032
bigBed narrowPeak
390
tagAlign
319
bed broadPeak
283
bigBed broadPeak
267
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
hic
22
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
69
Homo sapiens
Biosample type
64
tissue
4
primary cell
1
cell line
Organ
64
kidney
3
brain
2
blood vessel
2
epithelium
2
vasculature
1
connective tissue
1
liver
1
pancreas
Project
69
AMP
Genome assembly (visualization)
65
GRCh38
5
hg19
Lab
64
Katalin Susztak, Upenn
5
AMP-T2D consortium
Audit category:
1
inconsistent assembly
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
69 results
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ATAC-seq
Hi-C
tissue
kidney
64
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
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