Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
40
ChIP-seq
17
pCHi-C
5
ATAC-seq
Assay category
59
Transcription
40
DNA binding
5
DNA accessibility
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
8
control
5
RNA binding protein
Date released
160
May, 2022
121
May, 2021
100
February, 2023
88
August, 2021
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
14
May, 2023
10
November, 2020
7
August, 2020
5
March, 2019
5
March, 2023
3
October, 2022
1
October, 2017
Available data
175
bigWig
135
bam
bed narrowPeak
84
tagAlign
51
tsv
2
bed bed3+
Organism
121
Homo sapiens
Biosample type
72
primary cell
47
in vitro differentiated cells
2
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
1
pancreas
1
thymus
Project
68
T1D
53
AMP
Genome assembly (visualization)
61
hg19
51
GRCh38
Lab
AMP-T2D consortium
121
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
organ_slims!
adipose tissue
lab.title!
AMP-T2D consortium
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
121 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
primary cell
monocyte
51
1
CD8-positive, alpha-beta T cell
2
3
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 10 more…
in vitro differentiated cells
embryonic stem cell
5
37
5
tissue
pancreas
1
thymus
1
See all biosamples
Download