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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
WGBS
39
ATAC-seq
6
MeRIP-seq
3
Hi-C
Assay category
41
DNA methylation
39
DNA accessibility
3
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
6
November, 2020
3
October, 2022
Available data
80
zippedFastqFolder
fastq
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
89
Homo sapiens
Biosample type
83
primary cell
6
cell line
Organ
191
kidney
126
pancreas
89
epithelium
71
liver
40
heart
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
83
HPAP
6
AMP
Genome assembly (visualization)
3
hg19
Lab
AMP-T2D consortium
83
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
3
audit script error
organ_slims!
adipose tissue
lab.title!
AMP-T2D consortium
files.file_type!
fastq
BIOSAMPLE
ASSAY
89 results
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WGBS
ATAC-seq
MeRIP-seq
Hi-C
primary cell
pancreatic alpha cell
25
22
1
pancreatic beta cell
16
13
1
pancreatic acinar cell
4
1
cell line
EndoC_BH1
6
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