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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
DNase-seq
31
ChIP-seq
5
total RNA-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
186
DNA accessibility
31
DNA binding
8
Transcription
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
314
August, 2021
313
October, 2019
217
June, 2019
201
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
222
bam
214
bigWig
209
bed narrowPeak
209
bigBed narrowPeak
186
bed bed3+
186
bed broadPeak
186
bigBed broadPeak
9
tsv
Organism
227
Homo sapiens
Biosample type
165
tissue
60
primary cell
2
in vitro differentiated cells
Organ
84
kidney
43
musculature of body
35
heart
32
limb
30
brain
26
epithelium
18
connective tissue
18
ureter
7
eye
7
liver
7
vasculature
5
blood vessel
4
pancreas
2
artery
adipose tissue
Project
227
AMP
Genome assembly (visualization)
214
GRCh38
191
hg19
Lab
227
AMP-T2D consortium
Audit category:
28
inconsistent ontology term
4
audit script error
organ_slims!
adipose tissue
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
227 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
RNA microarray
tissue
heart
18
muscle of arm
17
kidney
13
1
muscle of leg
13
brain
12
+ See 35 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
hepatocyte
1
5
cardiac muscle cell
1
3
+ See 17 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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