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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1553
ChIP-seq
1084
total RNA-seq
500
ATAC-seq
369
single cell RNA-seq
200
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
21
RRBS
20
pCHi-C
19
Hi-C
15
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
19
3D chromatin structure
Date released
March, 2020
8
July, 2019
October, 2019
3
August, 2021
3
October, 2022
2
November, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Available data
9
hic
7
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
1
fastq
Organism
19
Homo sapiens
Biosample type
8
primary cell
8
tissue
3
cell line
Organ
7
pancreas
6
epithelium
4
limb
4
musculature of body
3
brain
3
liver
2
blood vessel
2
vasculature
1
connective tissue
1
kidney
Project
15
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
12
hg19
1
GRCh38
Lab
11
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
organ_slims!
adipose tissue
month_released!
March, 2020
October, 2019
BIOSAMPLE
ASSAY
19 results
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Hi-C
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
tissue
gastrocnemius medialis
4
islet of Langerhans
3
kidney
1
cell line
HepG2
2
EndoC_BH1
1
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